Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFDDNKERVIQEYVPGKQVTLAHLIANPNRDIYTKLGLEEGASAIGILTITPSEASIIASDIATKSGDVRIGFID----RFS-----GSVVLTGDVSSVESALQQVVFSLHEILDFSIPKITRS
3IO0 Chain:A ((188-289))
------------VYLCDAGHLEVQYTARASLIFEKAFGAPS-GQAFGIMHAAPAGVGMIVADTALKTADVKLITYGSPTNGVLSYTNEILITISGDSGAVLQSLTAARKAGLSIL----------
General information:
TITO was launched using:
RESULT:
Template:
3IO0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58563 for 718 contacts (-81.6/contact) +
2D Compatibility (PS) -10116 + (NN) -4410 + (LL) 1176
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -75263.0 ( -104.82 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_3IO0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IO0-query.scw
PDB file :
Tito_Scwrl_3IO0.pdb
: