Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIGIDKIGFYTPAFYVDMVELAEARNIDPNKFTIGIGQDKMAFAPITQDSVTMGANAALQILDEEDLKKIDLVILATESGIDESKAGAVYIHRLLGIQPFSRAIEIKEACYGATAGINLAKDYVAKHPDSKVLVIGSDIARYGLATGGEATQGAGAVAMVIAADPRCITLEDDNVFYTEDIMDFWRPVYSEYACVEGKYSTEQYIHFFQTIWEKYSAKFGKNLEDFAAICFHLPYTKMGKKALDTIIETAPSDVQEKLLENYRLSTLYSRNVGNIYTGSLYLSFISLLDNQPDLQAEDKIGFFSYGSGAVGEFFHGVLQPDYKKYIRKDEHAELLANRTKLAIPDYETKFKQQLPKDGSIFEVDPASDPAAIVLTGIQEHKRQYIKK |
3V4X Chain:B ((6-363)) | MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAGLQLAKNHVALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKEDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDFADYDALAFHIPYTKMGKKALLAKISDQTEAEQERILARYEESIIYSRRVGNLYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMFAETLDTD------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V4X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244781 for 3209 contacts (-76.3/contact) +
2D Compatibility (PS) -38178 + (NN) -13391 + (LL) 2036
1D Compatibility (HY) -39600 + (ID) 10200
Total energy: -344114.0 ( -107.23 by residue)
QMean score : 0.541
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