Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQFILTGGWSWYNNLVSQVPAGKLFSWKAVLDAIPSILERLPITLLLTVAGALFGLILALIFAVVKINRVKILYPIQALFVSFLRGTPILVQLMLSYYGIPLFLKFLNQKYGFDWNINAIPASVFAITAFAFNEAAYTSETIRAAILSVDQGEIEAARSLGMTSAQVYRRVIIPNAAVVATPTLINTLIGLTKGTSLAFNAGIVEMFAQAQIMGGSDYRYFERYISVALVYWAVSFLIEQLGNAIERKMAIKAPRHLTDEIPGGVR
4YMU Chain:C ((1-214))
MTV-----------------------DFLSMVKYTPLFISGLIMTLKLTFLAVTIGVLMGLFIALMKMSSIKPIKLVASSYIEVIRGTPLLVQLLLIYNGLM--------QFGMN-----IPAFTAGVSALAINSSAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYVIIPQAIKNILPALGNEFIVMLKESAIVSVIGFADLTRQADIIQSVTYRYFEPYIIIAAIYFVMTLTFSKLLSLFERRL-----------------
General information:
TITO was launched using:
RESULT:
Template:
4YMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137560 for 1582 contacts (-87.0/contact) +
2D Compatibility (PS) -22250 + (NN) -4685 + (LL) 3360
1D Compatibility (HY) -22400 + (ID) 3850
Total energy: -187385.0 ( -118.45 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_4YMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMU-query.scw
PDB file :
Tito_Scwrl_4YMU.pdb
: