Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDKFEWVKLIFATIAVVAILCFTVIGVQTIWTEDVVKDYNRHLTEQVYVDAA-VNQNVNLVFYKRGCPYCEVGKKAVINAAGKN--QFPTFYIDVESEDGQDLVKKYQVEKAATIVQIRGGRSKRVTYAVKDRYGHYQPKRQVIKEVFND
3TCO Chain:A ((10-95))
--------------------------------------------TEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDEN--QKIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL------
General information:
TITO was launched using:
RESULT:
Template:
3TCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36693 for 552 contacts (-66.5/contact) +
2D Compatibility (PS) -8891 + (NN) -2831 + (LL) 4816
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -45949.0 ( -83.24 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_3TCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TCO-query.scw
PDB file :
Tito_Scwrl_3TCO.pdb
: