Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSYEQEFLKDFEEWLQSQISINQMAMDSAKKVLEEDKDERAADAYIRYES----------KLDAYRFLQGKFNNYHNQ--KSFHDLPDGLFGQRHY
3GZF Chain:A ((1-96))
GLFEGDKFVGSFESAAMGTFVIDMRSYETLVNSTSLDRIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVSRNDKLYTPPTVSVNSTL-
General information:
TITO was launched using:
RESULT:
Template:
3GZF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13706 for 529 contacts (-25.9/contact) +
2D Compatibility (PS) -8668 + (NN) -452 + (LL) 92
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -25684.0 ( -48.55 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3GZF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZF-query.scw
PDB file :
Tito_Scwrl_3GZF.pdb
: