Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNVKKRPEVLSPAGTLEKLKVAIDYGADAVFVGGQAYGLRSR---AGNFSMEELQEGINYAHA-RDAKVYVAANMVTHEGNELGAGPWFRELRDMGLDAVIVSDPAL---------------IVICATE----APGLEIHLSTQASST-----------NYETFEFWKEMGLTRVVLAREVTMAELAEIRKRTDVEIEAFVHGAMCISYSGRCVLSNHMSHRDANRGGCSQSCRWKYDLYDMPFGQERQSLKGEIPEPFSMSAVDMCMIEHIPDMIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYMESPEAFEAIKEDLIDELWKVAQRELATGFYYHTPTENEQLFGARRKIPQYKFVGEVVSFDNAKMEATIRQRNVIMEGDRVEFYGPGFRHFECFIDGLRDAEGNKIDRAPNPMELLTITLPNPVKKGDMIRACKEGLVNLYQNDGTSKTVRA |
| 2QIW Chain:A ((20-202)) | ------KLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGY-GL---SPADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGLSTAEQVERLVDAVSVPVNITAHPVDGHGAGDLATLAGLGVRRVTFGPLWQKWLAATSAQQLKGWA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2QIW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80904 for 1106 contacts (-73.2/contact) +
2D Compatibility (PS) -16470 + (NN) -5467 + (LL) 15400
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -90291.0 ( -81.64 by residue)
QMean score : 0.490
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