Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNYRKLIVLLLLTFFVIFMGAYAYTHIVEKRSLTSNTIEKTLPVVNQIKPQTIKEYQNYLTKVAKRNVLPVDIPQALNNEKVEITATDGMQTFTWNDKNNPKQ---KVIFYVHGGSYIHQASELQYIFVNKLAKKLDAKVVFPIYPKAPTYNYSDAIPKIKKLYQNTLASVTSPKQIILVGESAGGGLALGLADNLVTEHIKQPKEIILISPWLDIATNNPKIEKVQKKDPLLKAWQ--LQQVAPYWANGKKNFKNPQVSPLYSSQFNKMAPISFFIGTHDIFYPDNQLLHQKLAKENIKHHYIVGQKMNH--VYPVLPIPEAETAFKQMLKIINH--- |
| 4Q05 Chain:A ((34-360)) | ENSWQ-------IGPRTLPAPSGASDVLYNIISKTPTPVP---TINLNLVPRTESEWRAAITQLDEGKVDMAREISKQLSVSVEHGVIEGVSVYYVTPVEVAPDLEDKLFVHTHGGAFVLNGGEAGTIEAIVIATLAKVRVLSIDYRMPPSHPAPAARDDVFTVYQHLLKQGSAQK-IALGGSSGGANLTMGLVQHLIEQEVDLPGALFLGTPGADMSKTGDSYYINDGIDRNLVTYDGFLEAAVRLYANGR-DLKDPLVSPLYGD-LHGFPPTFLITGTRDLLLSATVRTHIKLRQSGVVADLFVYEGIAHGDYAVDLTAPETQHAFAELNAFLLQHLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q05.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -119897 for 2805 contacts (-42.7/contact) +
2D Compatibility (PS) -33627 + (NN) -14892 + (LL) 1760
1D Compatibility (HY) -10000 + (ID) 3300
Total energy: -179956.0 ( -64.16 by residue)
QMean score : 0.474
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