Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKSKKIENYQLLLLQAQALFSDETNALANLSNASAMLNAMLPNSVFTGFYLFDGK--ELILGPFQGGVSCVHITLGKGVCGESAQTAKTLIVDDVTKHANYISCDSKAMSEIVVPMFKNGKLLGVLDLDSSLVADYDEIDQEYLEKFVGILVEHTIWNLDMFGVEK
3MMH Chain:B ((6-156))
FSASDKAALYREVLPQIESVVADETDWVANLANTAAVLKEAF-GWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVDAHPDHIACSSLSRSEIVVPLFSDGRCIGVLDADSEHLAQFDETDALYLGELAKILEKRFEASRQAV----
General information:
TITO was launched using:
RESULT:
Template:
3MMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80272 for 1156 contacts (-69.4/contact) +
2D Compatibility (PS) -16362 + (NN) -6889 + (LL) 252
1D Compatibility (HY) -15200 + (ID) 3150
Total energy: -121621.0 ( -105.21 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_3MMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMH-query.scw
PDB file :
Tito_Scwrl_3MMH.pdb
: