Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKDEMIAKGAKYIQSIYQDPFIQGIIKGRLDHDVICHYLQADNIYLGKFADIYALCLAKSDNLRDKQFFLEQIDFTLNRELADGEGPHQALAAYTNRSYQDIIEKGVWYPSADHYIKHMYFHFYENGIAGALAAMSPCPWIYHQLAKKIIEENQFLNGNPFNNWITFYANDTVEELMENYFRMMDYYAQNLSKEKQADLVDAFVKSCQMRDVFFKWQ
1RTW Chain:A ((1-204))
MFSEELIKENENIWRRFLPHKFLIEMAENTIKKENFEKWLVNDYYFVKNALRFMALLMAKAPDDL-LPFFAESIY-YISKELE----MFEKKAQELGISLN----GE-IDWRAKSYVNYLLSVASLGSFLEGFTALYCEEKAYYEAWKWVRENL--KERSPYQEFINHWSSQEFGEYVKRIEKILNSLAEKHGEFEKERAREVFKEVSKFELIFWDIA
General information:
TITO was launched using:
RESULT:
Template:
1RTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128543 for 1559 contacts (-82.5/contact) +
2D Compatibility (PS) -22045 + (NN) -9375 + (LL) 620
1D Compatibility (HY) -12000 + (ID) 1500
Total energy: -172843.0 ( -110.87 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1RTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RTW-query.scw
PDB file :
Tito_Scwrl_1RTW.pdb
: