Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATIKEIKAILETIVDLKDKRWQEYQTDSRAGVQKAILQRKKNIQSDLDEEARLEQMLVYEKKLYIEHINLIAGIDEVGRGPLAGPVVAAAVILPPN----CKIKHLNDSKKIPKKKHQEIYQNILDQALAVGIGIQDSQCIDDI--NIYEATKHAMIDAVSHLSVAPEHLLIDAMVLD-------------LSIPQTKIIKGDANSLSIAAASIVAKVTRDKIMSDYDSTYPGYAFSKNAGYGTKEHLEG-----LQKYGIT-PIHRKSFEPIKSML |
1IO2 Chain:A ((2-205)) | ----------------------------------------------------------------------KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDDYVILELPPDVIGSREGTLNEFEVENFAKALNSLKVKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYGEIG----SGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IO2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95294 for 1419 contacts (-67.2/contact) +
2D Compatibility (PS) -19263 + (NN) -6096 + (LL) 7056
1D Compatibility (HY) -8800 + (ID) 2750
Total energy: -125147.0 ( -88.19 by residue)
QMean score : 0.467
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