Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFQEKIAYNCAKKEALYKESLGRYALRSMLAGAYLTMSTAAGIVAADTIGKISPALSGFVFAFIFSFGLIYVLIFNGELATSNMLYLTAGAYNKNISWKKAITILIYCTFFNLVGACILAWLFNQSYSFQHLTNDSFLGHVVAKKLGKPSSGAFLEGIIANMFVNLAILAYMLLKEESAKMTVILSAIFMFVFLSNEHLIANFASFMLAAFSHIEHIKGFTLLNVIRQWTLVFFGNWIGGGVFIGLAYAWLNKTKTSHHE
3TDS Chain:E ((7-259))
--ETLDKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGIGILLIFTIGGLLTDAGSPMTKIVMGLSFAIALSLVIMTGTELFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAIITSGFEHSVANMTIYSVSLFSPTI--STVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----
General information:
TITO was launched using:
RESULT:
Template:
3TDS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -242871 for 2307 contacts (-105.3/contact) +
2D Compatibility (PS) -26929 + (NN) -14299 + (LL) 644
1D Compatibility (HY) -19200 + (ID) 3200
Total energy: -305855.0 ( -132.58 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_3TDS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDS-query.scw
PDB file :
Tito_Scwrl_3TDS.pdb
: