Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------MKFEKR---QVYYVVITFAICYAI----QAYWGAVSNILTTLHKAIFPFLMGAGIAYIINIVMSVYERLYIKLFKGSRLLMAIKRSVS--MILSYATFIGLIVWLFSIV--IPDLISSLSSLLVIDTGALAKLVNNLNENKQISEALNYMGTDKDLVST------LSGYSQQILKQV--LSVLTNLLTSVSSIAATLLNVFVSFIFSIYVLANKEQLGRQFNLLIDTYLGSTGKTFHYVRHILHQRFHGFFVSQTLEAMIL-GSLTVIGMLIFQFPYALTVGVLVAFTALIPVVGAYIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGG--------SIGLPSMWVLTAITIGGALWGIL--GMLLAVPV---AATIYQIVKDHIIKRQTLRNRARTYR--- |
| 4FDT Chain:A ((21-425)) | MQTKIQKYAGTAMPYPNRTDGMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKL---SKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLNKSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFLLNPEQYLDKEAEEFVMALFSVAAILPD-----------------TSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDY-QANFRFAH------AETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -402167 for 2741 contacts (-146.7/contact) +
2D Compatibility (PS) -35997 + (NN) 1817 + (LL) 1980
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -451417.0 ( -164.69 by residue)
QMean score : 0.280
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