Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKATFTRNQSGYLYSAEISGHAGSGEYGFDVICAAVSTLSINFINS-LEALTTCQAQLIINDVEGGYMKIDLSSIPQHKEDKVQLLFESYLLGMTNLSKDSSEFVSTIVMTH
2NLL Chain:A ((1-66))
----------------CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDL--TYTCR--------DNKDCLIDKRQRNRCQYCRYQKCLAM---GM------------------
General information:
TITO was launched using:
RESULT:
Template:
2NLL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29929 for 457 contacts (-65.5/contact) +
2D Compatibility (PS) -7045 + (NN) -2075 + (LL) 3908
1D Compatibility (HY) -1600 + (ID) 650
Total energy: -37391.0 ( -81.82 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_2NLL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NLL-query.scw
PDB file :
Tito_Scwrl_2NLL.pdb
: