Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARVKGGVVSRKRRKRVLKLAKGYYGAKHILFRTAKEQVMNSYYYAYRDRRQKKRDFRKLWITRINAAARMNGLSYSQLMHGLKLAEIEVNRKMLADLAVNDAAAFTALADAAKAKLGK
2GHJ Chain:A ((18-115))
-------------------LAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDRKILADMAVRDPQAFEQVVNKVKEALQV
General information:
TITO was launched using:
RESULT:
Template:
2GHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25461 for 558 contacts (-45.6/contact) +
2D Compatibility (PS) -11008 + (NN) -5121 + (LL) 1680
1D Compatibility (HY) -9200 + (ID) 2650
Total energy: -51760.0 ( -92.76 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_2GHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GHJ-query.scw
PDB file :
Tito_Scwrl_2GHJ.pdb
: