Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEKNTWKKLLVSTAALSVVAGGAIAATHSNSVDAASKTTIKLWVPTD--SKASYKAIVKKFEKENKGVTVKMIESNDSKAQENVKKDP--SKAADVFS-LPHDQLGQLVESGVIQEIPEQYSKEIAKNDTKQSLTGAQYKGKTYAFPFGIESQVLYYNKTKLTADDVKSYETITSKGKFGQ---QLKA----ANSYVTGPLFLSVGDT-LFGKSGE---DAKGTNWGNEAGVSVLKWIADQKKNDGFVN--LTAENTMSKFGDGSVHAFESGPWDYDAAKKAVGEDKIGVAVYPTMKIGDKEVQQKAFLGVKLYAVNQAPAGSNTKRISASYKLAAYLTNAESQKIQFEKRHIVPANSSIQSSDSVQKDELAKAVIEMGSSDKYTTVMPKLSQMSTFWTESAAILSDTYSGKI-KSSDYLKRLKQFDKDIAKTK |
| 2GH9 Chain:A ((2-376)) | --------------------------------------KITVWTHFGGPELEWLKEQARTFER-TSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLEPVGKYVTQAYLADLQGVAVEAFTFGGRLMGLPAFAESVALIYNKKYVKE-PPRTWEEFLALAQKLTTGATFGFLYNIGDPYFNFGFFKAFGAENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILNGPWALGDYKKA-K-VDFGIAPFPVPPGAKN--PWGPFLGVQGVVVNAYSK-----NKTQAVNFAKTLVTGRNLVAFNQAGGRIPVSKSAVKQL--EKDPVVAGFSKV---FPLGAPMPNIPEMGKVWGPWGNAISLAIQRPDSNV---KKIVEDMVAEIKKAI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GH9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -36170 for 3045 contacts (-11.9/contact) +
2D Compatibility (PS) -38282 + (NN) -13313 + (LL) 3288
1D Compatibility (HY) -18400 + (ID) 3550
Total energy: -106427.0 ( -34.95 by residue)
QMean score : 0.400
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