Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKFLVECGLGSRTQVKLILKKKQISVNGNSETSPKVQVDEYRDEIKYNGTLV-SYEKFVYYMLHKPKGVISATDDPSHKTVLDLLDKTARDKAVFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIILKD--FTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLRMGNLQLDKQLESGQWRRLTIKEIEKLEKYMQ
1VIO Chain:A ((3-233))
LRLDKFIAENVGLTRSQATKAIRQSAVKINGEIVKSGSVQISQ-EDEIYFEDELLTWIEEGQYFMLNKPQGCVCSNDD--YPTIYQFFDYPL-AGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAEGILLRGEKEPTKPAKLEILD------DYNVNLTISEGRYHQVKRMFAALGNKVVGLHRWKIGDVVLDESLEEGEYRPLTQSEIEKLV----
General information:
TITO was launched using:
RESULT:
Template:
1VIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99037 for 1705 contacts (-58.1/contact) +
2D Compatibility (PS) -24295 + (NN) -7975 + (LL) 1060
1D Compatibility (HY) -17200 + (ID) 4400
Total energy: -151847.0 ( -89.06 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1VIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIO-query.scw
PDB file :
Tito_Scwrl_1VIO.pdb
: