Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKTIFESKTEGNWFLGSFQAFNYFTCFGNDESYEAIQDVFHRLLSTLKVEGLQLHVVQMTSDFQLLAFLVDMINQEYSRHIKVTQHKGAILVSEDDQLFLVHLPKEGTSLEKFFDLKNDNNFGDTILIATHNEGKTKEFRELFGKLGLKVENLNDYPDLPEVEETGMTFEENARLKAETISKLTGKMVISDDSGLKVDALGGLPGVWSARFSGPDATDARNNAKLLHELAMVFDKERRSAQFHTTLVVSAPNKESLV-VEAEWPGYIGTEPKGENGFGYDPLFIVGEGSRTAAELSAQEKNNLSHRGQAVRKLMEVFPKWQLEN |
1VP2 Chain:B ((17-201)) | -----------------------------------------------------------------------------------------------------------------------------TVYLATTNPHKVEEIK----MIAPEWMEILPSPEKIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARF----MEEHSYKEKMRTILKMLEGKDRRAA-FVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEI-PHLKEKISHRSKAFRKLFSVLEKIL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VP2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10108 for 1495 contacts (-6.8/contact) +
2D Compatibility (PS) -19774 + (NN) -11124 + (LL) 9400
1D Compatibility (HY) -11600 + (ID) 3500
Total energy: -46706.0 ( -31.24 by residue)
QMean score : 0.437
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