Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATW----AGNWWGNGGDWAASAA--------SAGYTV-----GTQPRVGSIVCWTD----GSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATPGVVSYIYPN
2IO8 Chain:A ((56-154))
---------------------------------------------------------------KWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHG--NKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDTF
General information:
TITO was launched using:
RESULT:
Template:
2IO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33436 for 447 contacts (-74.8/contact) +
2D Compatibility (PS) -8665 + (NN) -4605 + (LL) 4828
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -46228.0 ( -103.42 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_2IO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IO8-query.scw
PDB file :
Tito_Scwrl_2IO8.pdb
: