Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ---MFYTIEELVEQANSQHKGNIAELMIQ----------TEIEMTGRSREEIRYIMSRNLEVMKASVIDGLTPSKSISGLTGGDAVKMDQYLQSGKTISDTTILAAVRNAMAVNELNAKMGLVCATPTAGSAGCLPAVISTAIEKL----NLTEEEQLDFLFTAGAFGLVIGN---NASISGAEGGCQAEV------------------GSASAMAAAALVMAAGGTPFQA-----------------------------------SQAIAFVIKNMLGLIC------DPVAGLVEVPCVKR-----NALGSSFALVAADMALAGIESQIPVDEVIDAMYQVGSSL-PTAFRETAEGGLAA------TPTGRRYSKEIFGE------------------------------------------------- |
3J9O Chain:B ((79-505)) | VIDKLIDLQVNSIISNDEFRALEQEWLKVQEVCQEDYDNVEVSILDVKKEELQYDFERNLYDISSSDFFKKVYVSEFDQYGGEPYGAILGLYNFENTTNDIIWLTGM--GMVAKNSHAPFIASIDKSFFGVKDLSEITHIKSFEALLEHPRYKEWNDFRNLDVAAYIGLTVGDFMLRQPYNPENNPVQYKLMEGFNEFVDYDKNESYLWGPASIHLVKNMMRSYDKTRWFQYIRGVESGGYVKNLVACVYDNKGILETKSPLNVLFADYMELSLAN-IGLIPFVSEKGTSNACFFSVNSAKKVEEFVDGFDSANSRLIANLSYTMCISRISHYIKCVIRDKIGSIVDVESIQKILSDWISEFVTTVYQPTPLEMARYPFRNVSIEVKTIPGKPGWYSCKINVIPHIQFEGMNTTMTIDTRLEPELFGTNN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77307 for 1929 contacts (-40.1/contact) +
2D Compatibility (PS) -30435 + (NN) -10253 + (LL) 228
1D Compatibility (HY) -10400 + (ID) 2300
Total energy: -130467.0 ( -67.63 by residue)
QMean score : 0.202
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