Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGADVPRDSQRARV-YAAEAFVRTLFDR--VTAHGSPTVEFFGTQLTLPPEGRFGSVASVQRYVDDVLALPAVGQNWPT-VSP-VRVRARRAATAAHYENHGGTGTIAVPDRHTAGWAMRELVVLHEVA-HHLCQVPPPHGPEFVATVCTLTELVMGPEVGHVFRVVYAQEGVR
2IAF Chain:A ((7-151))
--------SSHTVGPMLAANAFLQLLEQKNLFDKTQRVKVELYG-SLALTGKGH---------GTDKAILNGLENKAPESMIPRMHEILDSNLLNL------AGKKEIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNAN--------LLIEQVYYSIGGGFITTEEDFDK---
General information:
TITO was launched using:
RESULT:
Template:
2IAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68242 for 1025 contacts (-66.6/contact) +
2D Compatibility (PS) -14305 + (NN) -5229 + (LL) 2136
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -87790.0 ( -85.65 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_2IAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IAF-query.scw
PDB file :
Tito_Scwrl_2IAF.pdb
: