Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVLQELWFGVIAALFLGFFILEGFDFGVGMLMAPFAH-VGMGDPETHRRTALNTIGPVWDGNEVWLITAGAAIFAAFPGWYATVFSALYLPLLAILFGMILRAVAIEWRGKIDDPKWRTGADFGIAAG---SWLPALLWGV----AFAILVRGLPVDANGHVALSIPDVL---NAYTLLGG-----LATAGLFSLYGAVFIALKTSGPIRDDAYRFAVWLSLPVAGLVAGFGLWTQLAYGKDWTWLVLAVAGCAQAAATVLVWRRVSDGWAFMCTLIVVAAVV-------------------VLLFGALYPNLVPSTLNPQWSLTIHNASSTPYTLKIMTWVTAFFAPLTVAYQTWTYWVFR----------------QRISAERIPPPTGLARRAP------------- |
| 3J9Q Chain:A ((2-386)) | ----SFFHGVT---------VTNVDIGARTIALPASSVIGLCDVFTPGAQASAK------PNVPVLLTSKKDAAAAFG-----IGSSIYLACEAIYNRAQAVIVAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNAQPRLLVAPGHSAQQAVATAMDGLAEKLRAIAILDGPNSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAAR-NAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFLDGDETCRANLLNNANIATIIRDDGYRLWGNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDRGITKTYVKDVTEGLRAFMRDLKNQGAVINFEVYADPDLNSASQLAQGKVYWNIRFTDVPPAENPNFRVEVTDQWLTEVLDVA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -280800 for 2515 contacts (-111.7/contact) +
2D Compatibility (PS) -32911 + (NN) 251 + (LL) 2376
1D Compatibility (HY) -2000 + (ID) 3250
Total energy: -316334.0 ( -125.78 by residue)
QMean score : 0.110
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