Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRSYRPAPPIERVVLLNDRGDATGVADKATVHTGDTPLHLAFSSYVFDLHDQLLITRRAATKRTWPAVWTNSCCGHPLPGESLPGAIRRRLAAELGLTPDRVDLILPGFRYRAAMADGTVENEICPVYRVQVDQQPRPNSDEVDAIRWLSWEQFVRDVTAGVIA---PVSPWCRSQLGYLTKLGPCPAQWPVADDCRLPKAAHGN
1PPW Chain:B ((4-165))
-----------EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCD----LADVLHGIDATPWAFSPWMVMQ-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1PPW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66077 for 1240 contacts (-53.3/contact) +
2D Compatibility (PS) -17278 + (NN) -7602 + (LL) 1932
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -104875.0 ( -84.58 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_1PPW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PPW-query.scw
PDB file :
Tito_Scwrl_1PPW.pdb
: