Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVVAGEY---NGEMAKVKAMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGTF--------SECGVATYVWSMVMAYDSTKLAR-APQSWADFWNVREFPGKRGLRKGAKYTLEVALLADGVKAEDLYKVLATPEGVSRAFAKLDQLKPNI-QWWEAGAQPPQWLAAGDVVMSAAYNGRIAAAQKEGVKLAIVWP--GSLYDPEYWAVVKGTPNKALAEKFIAFASQPQTQKVFSEQIPYGPVHKGTLALLPKTVQEALPTAPANLEGARAVDAE-FWVDHGEELEQRFNAWAAR |
| 1POT Chain:A ((3-323)) | -----------------------------NNTLYFYNWTEYV----PPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYK--D-GAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNFS-NLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPE-YKGSLLLTDDAREVFQMALRKLGYSGN----TT-DPKEIEAAYNELKKLMPNVAAFNS--DNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLINFLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDA-ETIKNGEWQNDVGAASSIYEEYYQKLKAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1POT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71096 for 2570 contacts (-27.7/contact) +
2D Compatibility (PS) -32738 + (NN) -15765 + (LL) 4512
1D Compatibility (HY) -16400 + (ID) 3000
Total energy: -134487.0 ( -52.33 by residue)
QMean score : 0.395
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