Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVPTVLQKILARKAEEVAERRARVNLAEVERLARSADAPRGFANALLERAKRKEPA--VIAEIKKASPSKGVLREHFVPAEIARSYEAGGAACLSVLTDVDFFQGADAYLKEARAACALPVIRKDFMIDPYQIVEARAIGADCILLIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLPEIPRDRLVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLFFQERGAVVLGADPD
3T40 Chain:A ((5-251))
----TVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAAL------REPGIGVIAEVKR---------TIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA-GAKVIGVNAR-----DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCPK----
General information:
TITO was launched using:
RESULT:
Template:
3T40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140979 for 1932 contacts (-73.0/contact) +
2D Compatibility (PS) -25915 + (NN) -15607 + (LL) 2012
1D Compatibility (HY) -16800 + (ID) 4650
Total energy: -201939.0 ( -104.52 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3T40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T40-query.scw
PDB file :
Tito_Scwrl_3T40.pdb
: