Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVDKLHQYYGGSHILRGLSFEAKVGEVTCLLGRNGVGKTTLLRCLMGLVPAREGQVAWEGRSLTGLRPHQRVRAGIAYVPQGREIFPRLTVEENLLMG---------LSRFSARDARAVPDFIYELFPVLREMK-----QRRGGDLSGGQQQQLAIGRALASQPRLLILDEPTEGIQPSVIKEIGAVVRSLAARGDMAILLVEQFYDFAAELADQYLVMARGEIVQQGRGRDMESEGVRGLVAI
1G9X Chain:B ((7-239))
ILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG-ITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE------------
General information:
TITO was launched using:
RESULT:
Template:
1G9X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142619 for 1681 contacts (-84.8/contact) +
2D Compatibility (PS) -22909 + (NN) -8158 + (LL) 976
1D Compatibility (HY) -18800 + (ID) 3650
Total energy: -195160.0 ( -116.10 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_1G9X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G9X-query.scw
PDB file :
Tito_Scwrl_1G9X.pdb
: