Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAALLEFREVDVFYGPIQALKKVSLQVNEGETVSLIGANGAGKSTLLMSIFGQPRAAAGQILYRGQDIRQKSAHYVASNGIAQSPEGRRVFPDMSVEENLLMGTIPIGMD-HAEEDMQRMFELFP--RLKERRNQRAMTMSGGEQQMLAIARALMSRPKLLLLDEPSLGLAPIVVKQIFQTLRELARSGMTIFLVEQNANHALKLSDRAYVMVTGEIRMSGSGEELLGNQEVRNAYLGGH
4P32 Chain:B ((12-230))
--------------YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNL-MAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVK-------
General information:
TITO was launched using:
RESULT:
Template:
4P32.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101188 for 1656 contacts (-61.1/contact) +
2D Compatibility (PS) -23605 + (NN) -12335 + (LL) 1908
1D Compatibility (HY) -15200 + (ID) 3800
Total energy: -154220.0 ( -93.13 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_4P32.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P32-query.scw
PDB file :
Tito_Scwrl_4P32.pdb
: