Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQRLYRKRIVLGVGGGIAAYKSAELVRRLRDQGAEVRVVMTQGGREFITPLTLQALSGHPVHTDLLDPAAEAAMGHIELARWADLVLIAPATADLMARLVQGVANDLLTTLVLATDAQIALAPAMNQAMWRDTATQANAELLRQRGFHLFGPAAGSQACGDVGLGRMLEAEELAQRAADCFQRQALTGVHVLITAGPTQENIDPVRYITNHSSGKMGFALAEAAVEAGARVTLVTGPVHLPTP--DRVQRVDVVSARDMLAA-CEAAMPCDLLIASAAVADYRPEVV--------------------AAHKLKKDPTSGEGLLLQLVRNPDILATLAQREDRPFSVGFAAETE----NLLDYAARKLKDKNLDLIVANDVANPSIGFNSDENAITVIDRDLHPSTFAQTSKGKIARQLVAFIADRLNQQ |
| 2GK4 Chain:A ((3-231)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQASSNLKEFLSKQNHQAKISSTD---EVQVLFLKKTPKIISLVKEWNPTIHLIGFKLLVDVTEDHLVDIARKSLIKNQADLIIANDLT----QISADQHRAIFVEKNQL---QTVQTKEEIAELLLEKIQAYH--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116975 for 1547 contacts (-75.6/contact) +
2D Compatibility (PS) -21921 + (NN) -10202 + (LL) 15596
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -150002.0 ( -96.96 by residue)
QMean score : 0.459
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