Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSKVPYNKEYKDLDTKKHC
3O4M Chain:A ((1-124))
----------------------ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC
General information:
TITO was launched using:
RESULT:
Template:
3O4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64133 for 910 contacts (-70.5/contact) +
2D Compatibility (PS) -13215 + (NN) -7255 + (LL) 2372
1D Compatibility (HY) -15600 + (ID) 4700
Total energy: -102531.0 ( -112.67 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3O4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O4M-query.scw
PDB file :
Tito_Scwrl_3O4M.pdb
: