Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
1LFD Chain:D ((1-167))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
1LFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96640 for 1353 contacts (-71.4/contact) +
2D Compatibility (PS) -18419 + (NN) -4901 + (LL) 424
1D Compatibility (HY) -23200 + (ID) 8300
Total energy: -151036.0 ( -111.63 by residue)
QMean score : 0.743
(partial model without unconserved sides chains):
PDB file :
Tito_1LFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LFD-query.scw
PDB file :
Tito_Scwrl_1LFD.pdb
: