Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALKSLVVLPLLVLVLLLVRVQPSLGKESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
3DJO Chain:B ((1-124))
--------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV
General information:
TITO was launched using:
RESULT:
Template:
3DJO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25308 for 803 contacts (-31.5/contact) +
2D Compatibility (PS) -13901 + (NN) -11057 + (LL) 3040
1D Compatibility (HY) -14800 + (ID) 6200
Total energy: -68226.0 ( -84.96 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_3DJO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJO-query.scw
PDB file :
Tito_Scwrl_3DJO.pdb
: