Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
2TGD Chain:A ((8-229))
---------------------VGGYTCGANTVPYQVSLNSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN
General information:
TITO was launched using:
RESULT:
Template:
2TGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128641 for 1900 contacts (-67.7/contact) +
2D Compatibility (PS) -24316 + (NN) -12681 + (LL) 1740
1D Compatibility (HY) -30400 + (ID) 11050
Total energy: -205348.0 ( -108.08 by residue)
QMean score : 0.738
(partial model without unconserved sides chains):
PDB file :
Tito_2TGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TGD-query.scw
PDB file :
Tito_Scwrl_2TGD.pdb
: