Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
1J4R Chain:D ((1-107))
-GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
General information:
TITO was launched using:
RESULT:
Template:
1J4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57870 for 801 contacts (-72.2/contact) +
2D Compatibility (PS) -11717 + (NN) -5548 + (LL) 208
1D Compatibility (HY) -13600 + (ID) 5350
Total energy: -93877.0 ( -117.20 by residue)
QMean score : 0.726
(partial model without unconserved sides chains):
PDB file :
Tito_1J4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J4R-query.scw
PDB file :
Tito_Scwrl_1J4R.pdb
: