Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
3S70 Chain:C ((8-268))
-------FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPL----------------------YTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPK--
General information:
TITO was launched using:
RESULT:
Template:
3S70.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155030 for 1896 contacts (-81.8/contact) +
2D Compatibility (PS) -25409 + (NN) -6444 + (LL) 2228
1D Compatibility (HY) -36800 + (ID) 11950
Total energy: -233405.0 ( -123.10 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_3S70.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S70-query.scw
PDB file :
Tito_Scwrl_3S70.pdb
: