Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKLSVFFIFLFCSIATAAESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSN
1WUP Chain:D ((3-219))
--------------------SLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSESTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE---------
General information:
TITO was launched using:
RESULT:
Template:
1WUP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100387 for 1999 contacts (-50.2/contact) +
2D Compatibility (PS) -23862 + (NN) -13996 + (LL) 2060
1D Compatibility (HY) -31200 + (ID) 10800
Total energy: -178185.0 ( -89.14 by residue)
QMean score : 0.653
(partial model without unconserved sides chains):
PDB file :
Tito_1WUP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WUP-query.scw
PDB file :
Tito_Scwrl_1WUP.pdb
: