Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASSTTRGPRVSDLFSGLPPAVTTPANQSAEASAGNGSVAGADAPAVTPFQSLQLVHQLKGLIVLLYSVVVVVGLVGNCLLVLVIARVRRLHNVTNFLIGNLALSDVLMCTACVPLTLA-YAFEPRGWVFGGGLCHLVFFLQPVTVYVSVFTLTTIAVDRYVVLVHPLRRRISLRLSAYAVL---AIWALSAVLALPAAVHTYHVELKPHD--VRLCEEFWGSQERQRQLYAWGLLLVTYLLPLLVILLSYVRVSVKLRNRVVPGCVTQSQADWDRARRRRTFCLLVVIVVVFAVCWLPLHVFNL---LRDLDPHAIDPYAFGLVQLLCHWLAMSSACYNPFIYAWLHDSFREELRKLLVAWPRKIAPHGQNMTVSVVI |
4RWA Chain:B ((125-403)) | --------------------------------------------------------------ITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSAKYLMET--WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV-KALDFRTPAKAKLINICIWVLASGVGVPIMVMAVT---RPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLR------------GSKEKDRSLRRITR-MVLVVVGAFVVCWAPIHIFVIVWTLVDIDRR--DPLVVAALH-LCIALGYANSSLNPVLYAFLDENFKRCFR----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257939 for 1963 contacts (-131.4/contact) +
2D Compatibility (PS) -26753 + (NN) -8334 + (LL) 6812
1D Compatibility (HY) -30800 + (ID) 4550
Total energy: -321564.0 ( -163.81 by residue)
QMean score : 0.347
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