Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MATVNTDATDKDI-------SKFKVTFTLVVSGIECITGILGSGFITAIYGAEW--ARGK------------TLPTGDRIMLMLSFSRLLLQIWMMLENIFSLLFRIVYNQNSVYILFKVITVFLNHSNLWFAAW-LKVFYC-LRIANFNHPLFFLMKRKIIVLMPWLLRLSVLVSLSFSFPLSRDVFNVYVNSSIPIPSSNSTEKKYFSETNMVNLV---FFYNMGIFVPLIMFILAATLLILSLKRHTLHMGSNATGSRDPSMKAHIGAIKA----TSYF---------LILYIFNAIALFLSTSNIFDTYSSWNILCKIIMAAYPAGHSVQLILGNPGLRRAWKRFQHQVPLYLKGQTL |
| 4TNW Chain:A ((1-342)) | SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIH---NDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYT-----TKDIEYLWKEHSPLQLKVGLSSSLPS-----FQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWV-SFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGT--TEWNDISKRVDLISRALFPVLFFVFNILYWSRFGHHH--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TNW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -218867 for 1981 contacts (-110.5/contact) +
2D Compatibility (PS) -31727 + (NN) -1664 + (LL) 2124
1D Compatibility (HY) -13600 + (ID) 2800
Total energy: -266534.0 ( -134.55 by residue)
QMean score : 0.176
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