Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVTSAVAPCMSYASGKASAPSGACCSGVRTLNAKASTPADRKAACNC--LKNLAGS------GIS-----MGNAASIPGKCGVSVSIPISTKTNCNNLH
3OB4 Chain:A ((428-485))
-------------------------QERCCNELNEFEN------NQR--CMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11403 for 226 contacts (-50.5/contact) +
2D Compatibility (PS) -4572 + (NN) -1591 + (LL) 2176
1D Compatibility (HY) -3200 + (ID) 450
Total energy: -19040.0 ( -84.25 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: