Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TIQCGTVTSTLAQCLTYLTNS----G----P--------------LPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIK--G-L-------NTDLVAALPTTCGVSIPYPISFSTNCDSISTAV
1PSY Chain:A ((25-117))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR------------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33890 for 446 contacts (-76.0/contact) +
2D Compatibility (PS) -6176 + (NN) -3376 + (LL) 1956
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -45186.0 ( -101.31 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: