Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLT---SCGLAVPHC
1GCQ Chain:C ((1-69))
GSHMPKMEV-FQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV
General information:
TITO was launched using:
RESULT:
Template:
1GCQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25366 for 410 contacts (-61.9/contact) +
2D Compatibility (PS) -7012 + (NN) -3072 + (LL) 56
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -38244.0 ( -93.28 by residue)
QMean score : 0.251
(partial model without unconserved sides chains):
PDB file :
Tito_1GCQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GCQ-query.scw
PDB file :
Tito_Scwrl_1GCQ.pdb
: