Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACEVGQLTVCM----PAITTGAKPSGACCANLRAQQACFCQYAKDPSLGAYIRSPHASETLVSCGLAVPHC-------------------
1VD2 Chain:A ((11-99))
GPLGSQVRVKAYYRGDIMITHFEPSIS-FEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFPC
General information:
TITO was launched using:
RESULT:
Template:
1VD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28521 for 331 contacts (-86.2/contact) +
2D Compatibility (PS) -6825 + (NN) -456 + (LL) 56
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -37846.0 ( -114.34 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_1VD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VD2-query.scw
PDB file :
Tito_Scwrl_1VD2.pdb
: