Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----TVVGGWGIEEKAACIVTNLMSCLPAILKGSQP-----PAYCCEMLKEQQSCLCGYIKSPTFGHYV-----IPQNAHKLLAACGILYPKC------------------------------------------------------
1KNG Chain:A ((50-193))
RPAPQTALPPLEGLQADNVQVPGLD---PAAFKG-KVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKAL
General information:
TITO was launched using:
RESULT:
Template:
1KNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41276 for 437 contacts (-94.5/contact) +
2D Compatibility (PS) -7993 + (NN) -1643 + (LL) 176
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -53936.0 ( -123.42 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_1KNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNG-query.scw
PDB file :
Tito_Scwrl_1KNG.pdb
: