Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPGGCVPQLN---RLLACRAYLVPG------AA---------DPSADCCSALSSISRDCACSTMG----------------------IINSIPSRCNIGR-VNCSA
1SM7 Chain:A ((3-105))
---QKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55332 for 401 contacts (-138.0/contact) +
2D Compatibility (PS) -6418 + (NN) -1547 + (LL) -16
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -68463.0 ( -170.73 by residue)
QMean score : 0.384
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: