Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QGGGGGECVPQLN--RLLACRAYAVPG----A------GDP-----------SAECCSALSSISQGCACSAIS----------------------IMNSLPSRCHLSQINCSA
1PSY Chain:A ((14-116))
---SSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40075 for 384 contacts (-104.4/contact) +
2D Compatibility (PS) -6243 + (NN) -3797 + (LL) 164
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -54601.0 ( -142.19 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: