Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGRTPADEMALKLAPCASAGQDPNSAPSSGCCTAVRTIGKQSPKCLCAVMLSDT---A-KSAG-----IKPEAAISIPKRCNLVDRPVGYKCGAYTLP
3OB4 Chain:A ((428-483))
-------------------------------------QERCCNELNEF-ENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLR--------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19987 for 242 contacts (-82.6/contact) +
2D Compatibility (PS) -4652 + (NN) 99 + (LL) 904
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -26436.0 ( -109.24 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: