Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGKTPADKMAL--KLAPCASAGQDPKS---------------------VPSSGCCTAVHTIGKQSPKCLCAVMLSDTA----------KSAGIKPEVAMSIPKRCNLVDRPVGYKCGAYTLP
1PSY Chain:A ((15-116))
------------SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21100 for 484 contacts (-43.6/contact) +
2D Compatibility (PS) -7059 + (NN) -1897 + (LL) 380
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -31426.0 ( -64.93 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: