Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGPAAGGAAVADPAGCQDDVV--ALNEACYKYVQK-----GAPTVP------PSQECCDAVKSVDVPCVCSYLGSPGVRDN-------------ISMEKVFYVSQQCGVSIPGNCGGSKV
2LVF Chain:A ((4-106))
-----------AQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGL-RMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRCP----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21456 for 477 contacts (-45.0/contact) +
2D Compatibility (PS) -7803 + (NN) -622 + (LL) 488
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -34693.0 ( -72.73 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: