Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------APAGTTCEQLESVA--RSCTGYLKRSL-----------------IFLNDACCDGAESVYDALTTDAAVDLGFVCRCLRGFVISESLRPYLYRVANLPRLCRFKDRGPIPYNNSTIHDCRFSGTTRHSL
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQC----------NFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48482 for 650 contacts (-74.6/contact) +
2D Compatibility (PS) -10014 + (NN) -137 + (LL) 164
1D Compatibility (HY) 400 + (ID) 550
Total energy: -58619.0 ( -90.18 by residue)
QMean score : 0.249
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: