Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VYRPWPSECVEVANVMVEQCKMFFVHQESPPTAECCRWFSSRRKYAKERRRLCRCLEFLTTAFKNLKPDVLALSDQCHFSSGFPMSRDHTCA
2E2F Chain:A ((1-41))
-------------AVRIGPCDQVC-PRIVPERHECCRAHG-RSGYAYCSGGGMYCN------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2E2F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18662 for 275 contacts (-67.9/contact) +
2D Compatibility (PS) -3656 + (NN) 4518 + (LL) 3188
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -16762.0 ( -60.95 by residue)
QMean score : 0.033
(partial model without unconserved sides chains):
PDB file :
Tito_2E2F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E2F-query.scw
PDB file :
Tito_Scwrl_2E2F.pdb
: