Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVQSRMTPCLPYLTGSGPLGRCCGGVKGLLGAAKTPADRKTVCSCLKSAAGSI----GGIN-----VRKAAGLPNMCGVNIPYQISPSTDCTKVQ
3OB4 Chain:A ((429-485))
-----------------------ERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20612 for 254 contacts (-81.1/contact) +
2D Compatibility (PS) -5003 + (NN) -1897 + (LL) 1584
1D Compatibility (HY) -1200 + (ID) 600
Total energy: -27728.0 ( -109.17 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: