Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVASSISPCVNYVKSG---GA-------------------VPAACCNGIRSLNSAAKTTADRQTTCNCLKQASGAIK---GL-------NPNLAAGLPGKCGVNVPYKISTSTNCAAVK
1PSY Chain:A ((25-121))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21571 for 491 contacts (-43.9/contact) +
2D Compatibility (PS) -6562 + (NN) -1652 + (LL) 1796
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -32239.0 ( -65.66 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: